Abstract
The sustainable intensification of agriculture emphasizes the importance of beneficial soil microorganisms in minimizing chemical fertilizer and pesticide use while boosting plant nutrition and health. Arbuscular mycorrhizal fungi (AMF) form symbiotic relationships with land plants, facilitating nutrient absorption through extraradical networks of hyphae that spread from colonized roots into the soil. AMF protects plants from abiotic and biotic stressors while also regulating antioxidant enzymes and phytochemicals such as polyphenols, anthocyanins, phytoestrogens, and carotenoids. Recent research has raised concerns about using AMF symbionts to improve the nutritional and therapeutic value of food. Plant species have vast physiological and genetic variety, but only a few AMFs have been employed, restricting their full use. This review study focuses on the impact of AMF on plant secondary substance biosynthesis on health. It also discusses selecting the optimal symbionts for sustainable biotechnological applications in creating healthy and safe food. The article aimed to investigate how AMF improves soil qualities, including physical, biological, and chemical aspects. This study highlights information gaps and suggests potential areas for future research. This will enhance our understanding of AMF, promote more research, and help preserve soil fertility.
Keywords: Amf Functional Diversity; Sustainable Agriculture; Arbuscular Mycorrhizal Symbionts; Nutraceutical Value
Introduction
Sustainable intensification in agriculture prioritizes beneficial soil microorganisms to reduce synthetic fertilizer and pesticide use while improving plant health and nutrition value [1]. Agriculture must be intensified to meet the rising population’s food needs. Intensification poses significant environmental problems, including climate change, biodiversity loss, land degradation via salinization, erosion, compaction, depletion, and pollution. The use of synthetic pesticides and fertilizers during the green movement has significantly degraded the quality and condition of our natural assets, including water, air, and soil. This has resulted in depleted and polluted water resources, rising production costs, shrinking farmers, and declining rural populations [2]. Synthetic pesticides control nutrition, hormone balances, growth regulators, nutrient discharge, and disease prevention [3]. Rather than agrochemicals, Sustainable agriculture relies on biological interactions to promote plant development and growth. Mycorrhizae are fungi in the soil that help plants absorb nutrients and water. Mycorrhizae can increase root surface area, improving plant nutrition and water absorption across large soil volumes [4]. Research suggests that mycorrhizal organisms react differently depending on the plants they are attached to [5]. Modifying the strength of mycorrhizal fungi, which regulate plant-plant interactions, might affect plant development. Mycorrhizae, which provide critical nutrients to plants, are unharmed by fungicides and herbicides. Arbuscular Mycorrhizal Fungi (AMF), a group of beneficial soil microorganisms from the Glomeromycotina subphylum, are gaining global recognition. AMF or endomycorrhizae, containing fungi, belong to the newly created phylum Glomeromycota [6]. Approximately 80% of plants have a mutualistic interaction with the AMF in soil [7]. Some families, such as Chenopodiaceae, Polygonaceae, Cyperaceae, Amaranthaceae, Caryophyllaceae, Brassicaceae, and Juncaceae, have no known relationship to other families. Abiotic stress, including drought, nutritional imbalance, and temperature, can reduce crop output by up to 70% [7]. AMF-inoculated plants improved stomatal conductance and hydration, enhanced photosynthesis, and reduced oxidative stress [8,9,10,11]. Research indicates that AMF improves plant tolerance to biotic stress, leading to increased growth and productivity [12,13]. AMF has been shown to improve soil characteristics such as aggregation, nutrient availability, microbial activity, acidity correction, water retention, nitrogen, carbon, and phosphorus cycling, as well as plant growth and productivity [14,15,16]. Numerous studies suggest that they play an important role in plants’ stress tolerance systems. This review aims to summarize facts on AMF symbiosis, focusing on its benefits for soil. The initial focus is on AMF’s impact on soil chemical, biological, and physical properties. This article explains how AMF impacts soil aggregation, nutrient availability, and the proliferation of beneficial bacteria. The interactions between AMF and other soil microorganisms are analyzed for their diversity and relevance.
Mycorrhizal Fungi: Origin and Evolution
According to genetic research, the earliest mycorrhizal relationship occurred approximately 450 million years ago between some primitive, most likely aquatic fungi and charophycean algae, which are the algae that gave rise to plants. Nevertheless, this theory is not supported by any fossil evidence. The 407-million-year-old Rhynie chert provides the earliest conclusive fossil evidence of a plant-fungus interaction [17-19]. From their aquatic origins, green algae gave rise to semi-aquatic and ultimately terrestrial plants. Between 490-409 mya, when these semi-aquatic algae first invaded, they had to contend with a hostile environment that was devoid of organic matter and solely composed of mineral nutrients. Three distinct waves of mycorrhizal evolution can be identified based on all the data collected. The first wave represents the start of AM association during the Ordovician Period, which we have already discussed. AM fungus spores were detected in substrates 50 million years older than the Ordovician Period [20]. During the Cretaceous Period, the Orchidaceae, Ericaceae, and other plant families with nonmycorrhizal orectomycorrhizal roots, as well as some N2 fixing symbionts, emerged [18,21]. The ectomycorrhizal Pinaceae, which first appeared in the Late Triassic or Jurassic Period [8-10], are an exception to this rule. The third wave began in the Palaeogene Period (65 mya) and is still ongoing. The term ‘New Complex Root clades’ refers to plants that have recently acquired root characteristics and are typically unstable [16-18]. Temperature, environment, and soil complexity can all influence root types and mycorrhizal types in vegetation [20-22]. The NCR (New Complex Root) plant group is typically found in Australia, where the soil is old, deep, and severely leached. Over time, some plant lineages transitioned from non-mycorrhizal to ectomycorrhizal roots [15] or from ericoid mycorrhizal to ectomycorrhizal roots to a balanced mycoheterotrophy [23].
Fungal biodiversity and its functions in rhizospheric soil
Mycorrhizae are classified into two categories according to their hyphae structure. The name “ectomycorrhizal fungi” refers to fungal hyphae that do not infiltrate individual cells within the roots, while “endomycorrhizal fungi” invade and break through the cell wall (Figure 1) [24]. According to Heijden and Martin [25], there are four types of mycorrhizae: ectomycorrhizae, arbuscular mycorrhizae, ericoid mycorrhizae, and orchid mycorrhizae. Arbutoid mycorrhizae are classified as ectomycorrhizae, while monotropoid mycorrhizae are a separate category. Endomycorrhizae consist of arbuscular, orchid, and ericoid mycorrhizae. The rhizosphere refers to the soil around a root, where root activity affects the microbial ecology. Soil microbiota includes fungi that decompose organic matter and promote element release through mineralization [26]. Rhizosphere fungal communities are influenced by various factors, including root exudates, organic carbon concentration, and plant type [27]. Research indicates that while soil contains millions of fungus, its diversity is substantially smaller than that of the air [29], as illustrated in Figure 2. There is limited understanding of how agricultural activities impact microbial diversity and function, despite research indicating that AMF fungi play important roles in several ecosystems [30]. The impact of a diverse sustainable ecosystem on microbial diversity, as well as its role and function, remains unclear [31]. Identifying fungi can be done by various methods, including examining fruiting bodies or utilizing soil samples to create cultures. Molecular approaches were used to estimate over 3000 fungal species within a 400 Ha area, providing the most accurate data available [32]. A scientific investigation found that the most common fungi in soil samples were Basidiomycota, Zygomycota, and Ascomycota, with averages of 4.1%, 13.3%, and 68.7%, respectively [33]. Microorganisms, likely phototrophic and prokaryotic, are thought to have colonized land during the pre-Cambrian period, marking the beginning of life. Although recent evidence suggests that terrestrial plants may have evolved during the Ordovician period, the late Silurian period was traditionally thought to be when they first appeared. Vegetation evolves from green aquatic algae to semi-aquatic plants, followed by fully terrestrial plants, the first land plants. Semiaquatic algae colonized land 490 million years ago and faced severe environmental conditions. Mycorrhiza was first discovered in a fossilized arbuscule from the early Devonian period, around 400 million years ago. According to Simon, arbuscular mycorrhizal fungus originally emerged during the Silurian, Ordovician, and Devonian periods (462-363 mya) [32-33]. The dates coincide with the emergence of terrestrial plants. Fossils and genomic research show that AM fungus have historically developed symbiotic colonies in terrestrial habitats. This implied a symbiotic interaction between fungi and vascular land plants. Mycorrhizal interactions can involve multiple plant and fungal species. Approximately 80% of plant species and 92% of plant families develop symbiotic relationships with Arbuscular mycorrhizal fungus, which belongs to the phylum Glomeromycota [34].


Analysis of Fungal Morphology
Fungal morphology analysis is based on size and structure. Fungi are made up of mycelia, which sprout from the tips of their bodies, similar to how trees do. Fungi can be recognized from other species as they lack a hyphal septum. The spores are the key distinguishing feature of fungi. To study the morphologies of fungus, it’s required to isolate representative ones [35]. Fungi are typically viewed using microscopes, such as compound microscopes, scanning electron microscopes, and stereomicroscopes. Recent advancements in image and particle analysis, micromechanical devices, and morphological data have increased researchers’ understanding of microbial architectures [36].
Mycorrhizal Growth and Plant Interactions
Arbuscular mycorrhizal fungi may not produce hyphae during the symbiotic stage when no host plants are present. When root exudates are present, spores reach the pre-symbiotic stage, characterized by significant hyphal branching [19-21]. Appressoria can occur when a fungus meets a root surface before entering the epidermis. After symbiotic colonization, internal arbuscules (tree-like, highly branching structures) develop in the root cortical tissue. Simultaneously, an additional radical mycelium is produced. Plants play a significant role in regulating arbuscular mycorrhizal infection, leading to the possibility that cortical cell colonization causes similar alterations. Symbiotic partners need to converse and exchange signals, as well as communicate molecules between arbuscular mycorrhizae and plants, for proper development. Mycorrhizae-colonized roots use two nutrient uptake processes: the plant uptake route (PP) and the mycorrhizal uptake pathway (MP) (Figure 3).

The PP process absorbs nutrients directly from the root epidermis and hairs via a transporter. Mycorrhizal interactions in the MP rely on transporters in the extraradical mycelium (ERM) of fungi to move nutrients from the Hartig net to the intraradical mycelium (IRM) in the inner cell walls, as seen in the mycorrhizal interface. Mycorrhiza-inducible plant transporters absorb the interfacial apoplast through the periarbuscular membrane. The visible fungi show the several fungal species that have colonized a single host root, each with their own distinct colonization ability.
Mycorrhizal fungi can mitigate the abiotic pressures caused by climate change that impact tree growth in temperate and boreal forests (Figures 4A & 4B ).
Mycorrhizal Plants Produce Phytochemicals
Studies show that AM symbiosis affects plant physiology and host cell metabolism [37]. Phytochemicals such as genistein, biochanin A, daidzein, and formononetin can prevent degenerative diseases, sesquiterpene lactones, menopausal symptoms, and osteoporosis [38]. They also inhibit cell proliferation and tumor growth [39]. Furanocoumarins (angelicin, mycorrhizal, and plant psoralen), pterocarpans (erybraedin C and bitucarpin A), and forskolin are chemotherapeutic compounds that induce apoptosis in human colon cancer cell lines [15-17]. After mycorrhizal colonization, phytochemicals in aromatic and therapeutic plants were analyzed. Basil shoots contain higher quantities of antioxidant chemicals, including rosmarinic acid, caffeic acid, and essential oils [39-41]. Research on the phytochemical composition of mycorrhizal plants grown for human food focuses on a few species, including maize, strawberry, onion, pepper, lettuce, artichoke, sweet potato, and tomato (Table 1). Most studies on edible plant products focus on single species, with few comparing cultivars and variants within the same species. Only a few green and red leaf lettuce cultivars outperformed the control group in terms of anthocyanins, carotenoids, chlorophyll, tocopherol, and total phenolics, as well as antioxidant activity (Table 1).


Strawberry mycorrhizae cultivars differed in their quantities of anthocyanins, anthocyanidins, and vitamin C in fruits (Table 1). There are numerous new and ancient kinds available for research and selection based on their ability to produce beneficial chemicals through mycorrhizal inoculation. However, current studies have limited their scope. Selection is crucial for functional foods such as globe artichoke, which has hepatoprotective, anticarcinogenic, antioxidative, and antibacterial properties, and tomato, which has been shown to reduce the risk of cancer and cardiovascular disease [12-14]. Growing artichoke and tomato on AMF-inoculated plants resulted in higher antioxidant activity and health-promoting compounds (Table 1). Plant hormones such as ABA and jasmonates may influence the accumulation of these compounds in plant reactions to abiotic and biotic stressors, potentially influencing long-distance signaling and defense responses in mycorrhizal fungus [42-44]. Gene expression studies on food plants and model plant species (Table 1) reveal differential expression of key enzymes involved in biochemical pathways leading to health-promoting secondary metabolites [45]. RNASeq. technology in food plants revealed upregulation of genes in various functional classes, including post-translational regulation, transport, signaling, biotic and abiotic stressors, and hormone metabolism [46-65]. These genes were differentially expressed in leaves, fruits, and roots compared to controls. The majority of the RNA-Seq. data utilized to uncover mycorrhizal regulated genes in plants such as Litchi chinensis, Cucumis sativus, Oryza sativa, Citrus sinensis, Vitis vinifera, and Helianthus annuus came from their roots. Next studies should concentrate on the edible sections of food plants in order to understand more about the genes directing the production of health-promoting chemicals, mediated by mycorrhizal symbioses. Gene expression varies among plant organs (Table 1).
Inorganic and Organic Fertilizers Affect AM Diversity
Fertilizer application affects various aspects of agricultural soil, including organic matter, nutrient content, humic acid, soil aggregation, microbial diversity, pH, and more. However, the AMF community’s response to fertilization varies based on the amount or dose applied. Mycorrhizal fungi are symbiotic with plants and help mobilize minerals. The availability of various nitrogen sources in soil impacts the diversity of mycorrhizal fungus and the communities they form. Applying P fertilizers reduced mycorrhizal colonization, arbuscule colonization, and hyphal density, but did not significantly alter the structure of the mycorrhizal community [66].
Effects of AMF on Soil’s Physical, Chemical, and Biological Properties
Arbuscular Mycorrhizae are fungi that improve soil structure. These mycelia, also known as hyphae, can generate strong soil aggregates. Mycorrhizal fungi’s extramatrical mycelia produce glomalin, a glycoprotein that acts as a soil binding agent [67]. Glomalin is hydrophobic, heat-tolerant, and can endure warm soil temperatures. Senescent mycelia produce the majority of glomalin, which has hydrophobic characteristics and provides water resistance to soil aggregates. The soil’s structure is generated by the decomposition of dead mycelia, and the mycelia network regenerates continuously [68]. These solutions reduce soil compaction and improve fertility [49]. It is unclear how long glomalin remains in soil and how cultural actions like bush burning affect it.
AMF’s Effect on Improving Soil Chemical Properties
Arbuscular Mycorrhizae Fungi symbionts have an important part in soil biogeochemical cycles (C, P, and N). In this condition, mycorrhizal development is more effective. Phosphorus is a critical component that affects the availability of AMF’s after it. It is found in several molecules, such as ATP, nucleotides, phospholipids, enzymes, and coenzymes [50]. Gianinazz et al. found that accumulated P in soils can sustain crop output for around 100 years. Soil cations absorb inorganic orthophosphate, which is the primary source of P. The amount of calcium (Ca), iron (Fe), and aluminum (Al) oxides affects the availability of P in soil. These oxides fix phosphorus into tricalcium phosphate [Ca3(PO4)2], aluminum phosphate (AlPO4), and iron phosphate (FePO4) [69]. Plants have access to less than 1% of the legacy phosphorus [70]. P from reservoirs must be hydrolyzed before it can be absorbed by plants in soil. AMF provides the necessary soluble P for plant physiological functions. This process increases the conversion of P into bioavailable forms through chemical and biological interactions [71]. Recent research indicates that AMF do not disseminate phosphatases into soil [72]. Instead, they attract PSB bacteria, which can produce phosphatase. The phosphatase enzyme converts phosphoric acid monoesters into P ions and molecules with free hydroxyl groups, releasing P from organic or inorganic orthophosphate [38]. The fructose secreted by AMF stimulates phosphatase synthesis, which is further boosted by the double inoculation of Rahnella aquatilis and R. irregularis. This leads to improved inorganic P solubilization [73]. AMFs improve the effectiveness of rock phosphate fertilizers (RPs), which are typically inefficient. RP has limited efficacy. According to Billah et al. (2019), adding fertilizer only makes a portion of it available to plants, while the rest becomes insoluble. AMF transforms insoluble P to soluble forms by generating acids during metabolic activities [74]. It’s unclear if P can trigger AMF to initiate a root infection. Plants prefer nitrogen in the form of nitrate (NO3) and will only absorb a portion of ammonium. The AMF mycelium can absorb nitrogen in the form of ammonium ions (NH+4), nitrates (NO3), and amino acids [75]. Local transporters in the AMF hyphae require access to nitrogen to function properly. AMF’s Impact on Soil Carbon Cycle and Arbuscular Carbon Sequestration. Mycorrhizae-forming fungi play a critical role in the global carbon cycle. Research indicates that mycorrhizal roots increase the demand for carbon sinks. The host plant achieves its C requirement through photosynthesis [76, 77]. AMF improves soils’ ability to absorb trace elements such Fe, Mg, Ca, Cu, Zn, Mn, K, and Co [78].
The Biological Properties of Soil and the Effect of AMF
Effects of AMF and soil biological properties One of the most crucial aspects of soil is the existence of microorganisms. Soil serves as a continuous biological reactor for a number of biochemical reactions and vital ecological processes. These beneficial interactions improve soil fertility, plant tolerance to biotic stimuli, biological control of root diseases, and nutrient uptake by plants [79]. AMF communities impact the physicochemical environment of the rhizosphere and control a variety of soil microbial interactions [80, 81]. Examples of interactions between AMFs and other microbes are shown in Table 1. However, other variables, such as the availability of phosphorus and nitrogen, also affect these interactions [82]. However, there are still many unanswered questions and a lack of expertise. How might soil microbes interfere with or completely prevent AMF’s operations? What function does AMF serve in the trophic chain? Stated differently, are soil microorganisms able to parasitize or prey on AMFs? It is also necessary to conduct research on the interactions between free native nematodes and AMF and how they impact cereal crop growth in water stress situations.
The Function of AM Fungus in Agriculture Sustainability and Nutrient Acquisition
Mycorrhizal fungi help improve the availability of nutrients that are neither mobile or diffuse. Plants with mycorrhizae have a huge surface area of fungal hyphae on their external roots, which improves their ability to absorb inorganic nutrients [83]. Mycorrhizae benefit plants by increasing their phosphorus absorption. Fungal AMT1 family transporters, including GintAMT1 with Glomus intraradicies, mostly absorb ammonia as the primary source of nitrogen [84]. AM symbiosis can improve crop quality by increasing macro- and micronutrients, as well as plant nutrition [72].
Aggregation and Stabilization of Soils
The AM fungal mycelial network improves soil structure by attaching to it. Glomalin, a hydrophobic proteinaceous substance released by AM fungus, contributes to soil stability and water retention. A dense hyphal network and glomalin secretion help stabilize soil aggregates, improving structural stability and quality [85].
Mitigation of Abiotic Stress
Mineral depletion, drought, salinity, heavy metals, and heat are common issues in arid and semi-arid locations worldwide. Improving soil quality and crop productivity under difficult edaphoclimatic conditions is crucial for the agricultural industry [86]. AM fungi have been shown to enhance plant tolerance to abiotic stress situations [87]. These chemicals reduce osmotic potential, resulting in lower leaf water potential. Plant’s lower potentials allow them to maintain high levels of organ hydration and turgor pressure, supporting overall cell physiology, including photosynthesis [88]. AM plants can better withstand oxidative stress from drought or salinity by producing more antioxidant molecules that scavenge ROS and boost the activity of antioxidant enzymes [89]. AM root colonization can enhance root growth, hydraulic features, and architecture, leading to the development of a highly effective root system for water and nutrient uptake. Several mycorrhizal fungal strains, including Glomus intraradices and Glomus Fungal hyphae and arbuscules are the primary sites for heavy metal accumulation. Fungal hyphae can cling to metals, immobilizing heavy metals. AM fungi enhance root Pi uptake and buffer cadmium uptake, reducing its negative impact on plant growth [90, 91-100]. Reduction of biotic stresses Plants are attacked by different species, including fungi, bacteria, viruses, and nematodes. Arbuscular mycorrhizal (AM) symbiosis with plant hosts can minimize insect pests and pathogens. AM symbioses have been shown to reduce the negative impact of soil-borne diseases. Research indicates that some fungus, bacteria, and oomycetes, such as Aphanomyces, Phytophthora, and Pythium, as well as bacteria like Erwinia carotovora, can reduce the frequency and severity of root rot and wilting. Several mechanisms have been proposed to explain how AMF protects host plants against diseases. Mycorrhizal mediated biotic stress tolerance by host plants can be attributed to various mechanisms, including increased root thickness and chemical alterations. AM plants contain high quantities of amino acids, including arginine. Mycorrhizal symbiosis transforms the host plant’s physiological state. Carbon sequestration and AM Fungi AM fungi, in exchange for host photosynthetic carbon, perform ecological functions that promote host fitness at all scales, from individual to community [101]. AM fungi store carbon in soil by transferring photosynthates from host plants to their intraradical and extraradical hyphae [102]. Glomalin may stabilize soil aggregates, affecting carbon storage indirectly [59]. There is a strong correlation between glomalin levels in soil, hyphal length, and aggregate stability. The AM symbiosis can produce secondary metabolites that enhance plant resilience to stresses and benefit human health through antioxidant activity. Field-grown plants had up to 50% higher Zn levels in shoots and fruits compared to mutant plants with reduced mycorrhizal colonization [103].
Challenges of AMF Application
Although mycorrhiza associations, such as AMF, can improve soil fertility, plant growth, crop yield, and stress resistance, they may not always be as effective as they could be. To fully understand the benefits of mycorrhizal fungi, large-scale field trials are necessary to select appropriate AM combinations for various plants. There is a significant problem associated with indigenous AMF in soils. Native and new mycorrhizal fungi compete with each other if new AMF are introduced into the soil. These native mycorrhizas could occasionally take over and produce superior results than the new ones. Mycorrhizal species can produce different effects based on their geographic location [104,105]. To address this issue, isolate indigenous mycorrhizal strains to produce inoculum, then reintroduce them on a broad scale [104].
Conclusion and Future Prospective
Arbuscular mycorrhizal fungi play a critical role in soil biology. AMF’s help plants absorb water, consume nutrients, and withstand biotic and abiotic stressors. The role of AMF in improving soil fertility has long been known, but our understanding of the underlying mechanisms remains limited. Several research have examined how AMF affects the chemical, physical, and biological aspects of soil. This review provides a comprehensive explanation of how AMF symbiotic interactions with crops improve soil chemical, physical, and biological properties. One way AMF affects soil fertility is by the synthesis of glomalin, which improves carbon storage and stability. AMF’s beneficial interactions with other soil bacteria, like Phosphate Solubilizing Bacteria that create phosphatase enzyme and mineralize organic phosphate, were highlighted. Future research should explore how soil affects the performance of AMF. Future studies should use molecular approaches, such as transcriptome, gnomonic, and fungal mutants, to investigate N regulation and uptake from soil during AMF symbiosis. Further research is needed to determine the effectiveness of glomalin in improving carbon sequestration efficiency across different soil types and climatic situations. This could help solve soil deterioration caused by climate change. Evaluate the accumulation and lifetime of glomalin in soil fertility indices under different climatic, agricultural, and management conditions. The impact of AMF on soil basal respiration is also being investigated. The obligatory biotrophic nature of AMFs makes understanding their function in soil challenging. More field research is needed to determine how plant biodiversity affects AMF diversity and operation. All these research issues should be founded on innovative methodologies, such as recent methodological developments in molecular biotechnology, physiology, and agroecology integrated into both laboratory and field circumstances. Such measures are crucial for our ability to initiate a fresh “green revolution” that is in line with the circumstances needed to create a sustainable development that is rooted in agricultural production.
Acknowledgement
The authors are thankful to the Convenor, Prof. Sarita Srivastava and Principal, Prof. Ajay Prakash Khare, CMP Degree College, University of Allahabad, for providing the necessary facilities to carry out the research.
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